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Rutgers University

  1. Pilot-Abstraction: A Valid Abstraction for Data-Intensive Application on HPC, Hadoop and Cloud Infrastructures?
    Authors: Andre Luckow, Pradeep Mantha, Shantenu Jha
    pdf version here
  2. A Tale of Two Data-Intensive Paradigms: Applications, Abstractions, and Architectures
    Authors: Shantenu Jha, Judy Qiu, Andre Luckow, Pradeep Mantha, Geoffrey C. Fox
    2014 IEEE International Congress on Big Data (BigData Congress), 2014
    pdf version here

Stony Brook University and Emory University

  1. Liver Whole Slide Image Analysis for 3D Vessel Reconstruction
    Authors: Y. Liang, F. Wang, D. Treanor, D. Magee, G. Teodoro, Y. Zhu, J. Kong
    International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’2015), Accepted, Brooklyn, NY, USA, April 16-19, 2015.
  2. Automated Cell Recognition with 3D Fluorescence Microscopy Images
    Authors: J. Kong, F. Wang, G. Teodoro, Y. Liang, Y. Zhu, C. Tucker-Burden, D.J. Brat
    International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’2015), Accepted, Brooklyn, NY, USA, April 16-19, 2015.
  3. A Framework for 3D Vessel Analysis using Whole Slide Images of Liver Tissue Sections
    Authors: Y. Liang, F. Wang, D. Treanor, D. Magee, N. Roberts, G. Teodoro, Y. Zhu, J. Kong
    International Journal of Computational Biology and Drug Design. In Press
  4. High Performance Spatial Queries for Spatial Big Data: from Medical Imaging to GIS
    Authors: F. Wang, A. Aji and H. Vo
    In Press. ACM SIGSPATIAL Special Issue, 2015
  5. Effective Temporal Modeling for Scalable Spatio-Temporal Queries
    Authors: H. Vo and F. Wang
    To Appear in Proc. of the International Workshop on Spatiotemporal Computing (IWSC'2015). Fairfax, Virginia, July 13-15th, 2015
  6. High Performance Integrated Spatial Big Data Analytics
    Authors: X. Chen, H. Vo, A. Aji and F. Wang
    In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014), Nov 4, 2014, Dallas, TX, USA
  7. Haggis: Turbo Charge A MapReduce based Spatial Data Warehousing System with GPU Engine
    Authors: Ablimit Aji, George Teodoro and Fusheng Wang
    In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014), Nov 4, 2014, Dallas, TX, USA
  8. SATO: A Spatial Data Partitioning Framework for Scalable Query Processing
    Authors: A. Aji, G. Teodoro and F. Wang
    In Proc. of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2014), November 4-7, 2014, Dallas, TX, USA

Indiana University

  1. Datanet: CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science
    Authors: Indiana University (Fox, Qiu, Crandall, von Laszewski), Rutgers (Jha), Virginia Tech (Marathe), Kansas (Paden), Stony Brook (Wang), Arizona State (Beckstein), Utah (Cheatham)
    Presentation at "Advancing the state-of-the-art in high-performance computing, communications and data analytics" workshop at Pittsburgh, PA May 17-18 2016.
    ppt version here
  2. Towards HPC-ABDS: An Initial High-Performance Big Data Stack, in Building Robust Big Data Ecosystem
    Authors: Judy Qiu, Shantenu Jha, Andre Luckow and Geoffrey C. Fox
    ISO/IEC JTC 1 Study Group on Big Data. March 18-21, 2014. San Diego Supercomputer Center, San Diego
    pdf version here
  3. High Performance High Functionality Big Data Software Stack
    In Big Data and Extreme-scale Computing (BDEC)
    Authors: Geoffrey Fox, Judy Qiu, and Shantenu Jha
    Fukuoka, Japan, 2014
    pdf version here
  4. A Tale of Two Data-Intensive Approaches: Applications, Architectures and Infrastructure
    Authors: Shantenu Jha, Judy Qiu, Andre Luckow, Pradeep Mantha, and Geoffrey C. Fox
    In 3rd International IEEE Congress on Big Data Application and Experience Track. June 27- July 2, 2014. Anchorage, Alaska
    pdf version here
  5. HPC-ABDS Kaleidoscope of over 300 Apache Big Data Stack and HPC Technologies
    Accessed April 8, 2014
    Available here
  6. Towards an Understanding of Facets and Exemplars of Big Data Applications
    Authors: Geoffrey C. Fox, Shantenu Jha, Judy Qiu, and Andre Luckow
    In 20 Years of Beowulf: Workshop to Honor Thomas Sterling's 65th Birthday, October 14, 2014. Annapolis, MD
    pdf version here
  7. Big Data Use Cases and Requirements
    Authors: Geoffrey Fox and Wo Chang
    In 1st Big Data Interoperability Framework Workshop: Building Robust Big Data Ecosystem ISO/IEC JTC 1 Study Group on Big Data
    March 18 - 21, 2014. San Diego Supercomputer Center, San Diego, CA
    pdf version here
  8. NIST Big Data Use Case & Requirements
    2013 [accessed March 1, 2015]
    Available here
  9. Ogres: A Systematic Approach to Big Data Benchmarks
    Authors: Geoffrey C. Fox, Shantenu Jha, Judy Qiu, and Andre Luckow
    In Big Data and Extreme-scale Computing (BDEC) January 29-30, 2015. Barcelona
    pdf version here
  10. Towards a Comprehensive Set of Big Data Benchmarks
    Authors: Geoffrey C. Fox, Shantenu Jha, Judy Qiu, Saliya Ekanayake, and Andre Luckow
    February 15, 2015
    pdf version here
  11. ESTIMATING BEDROCK AND SURFACE LAYER BOUNDARIES AND CONFIDENCE INTERVALS IN ICE SHEET RADAR IMAGERY USING MCMC
    Authors: Stefan Lee, Jerome Mitchell, David J. Crandall, and Geoffrey C. Fox
    The International Conference on Image Processing (ICIP), Paris, France. October 27-29, 2014
    pdf version here
  12. Harp: Collective Communication on Hadoop
    Authors: Bingjing Zhang, Yang Ruan, and Judy Qi
    In IEEE International Conference on Cloud Engineering (IC2E), March 9-12, 2015. Tempe, AZ
    pdf version here
  13. HPC-ABDS: High Performance Computing Enhanced Apache Big Data Stack
    Authors: Geoffrey Fox, Judy Qiu, Shantenu Jha, Supun Kamburugamuve and Andre Luckow
    Invited talk at 2nd International Workshop on Scalable Computing For Real-Time Big Data Applications (SCRAMBL'15) at CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China
    pdf version here
  14. Parallel Clustering of High-Dimensional Social Media Data Streams
    Authors: Xiaoming Gao, Emilio Ferrara, Judy Qiu
    Presented at CCGrid2015, the 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, held in Shenzhen, Guangdong, China
    pdf version here

University of Kansas

  1. Radiostratigraphy and age structure of the Greenland Ice Sheet
    Authors: MacGregor, J.A., M.A. Fahnestock, G.A. Catania, J.D. Paden, S. Gogineni, S.C. Rybarski, S.K. Young, A.N. Mabrey, B.M. Wagman and M. Morlighem
    Journal of Geophysical Research Earth Surface, Jan 2015, 2014JF003215.
    pdf version here
  2. Bed Topography of Jakobshavn and Byrd Glaciers
    In Big Data and Extreme-scale Computing (BDEC)
    Authors: S. Gogineni, J.-B. Yan, J. Paden, C. Leuschen, J. Li, F. Rodriguez-Morales, D. Braaten, K. Purdon, Z. Wang, W. Liu, and J. Gauch
    Journal of Glaciology, vol. 60, no. 223, pp. 813-833, Nov 2014.
    pdf version here
  3. Radar Mapping of Isunguata Sermia Glacier, Greenland,
    In Big Data and Extreme-scale Computing (BDEC)
    Authors: Ken Jezek, Xiaoqing Wu, John Paden, Carl Leuschen
    IGS Journal of Glaciology, vol. 59, no. 218, 1135-1146, 2013.
  4. Layer-finding in Radar Echograms using Probabilistic Graphical Models
    2012 International Conference on Pattern Recognition
    Authors: David J. Crandall, Geoffrey C. Fox, John D. Paden
    Journal of Glaciology, vol. 60, no. 223, pp. 813-833, Nov 2014.
    pdf version here
  5. High-Altitude Radar Measurements of Ice Thickness over the Antarctic and Greenland Ice Sheets as a part of Operation Ice Bridge
    Authors: Jilu Li, John Paden, Carl Leuschen, Fernando Rodriguez-Morales, Richard Hale, Emily Arnold, Reid Crowe, Daniel Gomez-Garcia, and Sivaprasad Gogineni,
    IEEE Transactions on Geoscience and Remote Sensing, 2012, vol.50, no. 12, doi: 10.1109/TGRS.2012.2203822.
    pdf version here
  6. Ice-sheet bed 3-D tomography
    Authors: John Paden, Torry Akins, David Dunson, Christopher Allen, Sivaprasad Gogineni
    Journal of Glaciology, 56 (195), 3-11.
    pdf version here
  7. Comparison of tomographic methods for ice bottom mapping,
    Authors: John D. Paden, Sahana Raghunandan, Shannon Blunt, Carl Leuschen
    International Glaciological Society Radioglaciology 2013 Meeting, Sept 9-13, entry 67A084.
    Information available here
  8. 3D Imaging of Ice Sheets
    Authors: John Paden, Christopher Allen, Prasad Gogineni
    IEEE Geoscience and Remote Sensing Symposium, 2010 (IGARSS ’10), Honolulu, Hawaii, 25-30 July, 2010.
    pdf version here

Arizona State University

  1. MDAnalysis: A toolkit for the analysis of molecular dynamics simulations.
    Authors: N. Michaud-Agrawal, E. J. Denning, T. B. Woolf, and O. Beckstein.
    J Comp Chem, 32:2319–2327, 2011. doi: 10.1002/jcc.21787.
    More information here

Virginia Polytechnic Institute and State University

  1. Parallel Algorithms for Generating Random Networks with Given Degree Sequences.
    Authors: Maksudul Alam and Maleq Khan.
    12th IFIP International Conference on Network and Parallel Computing (NPC), New York City, Sep. 2015.
    pdf version here.
  2. A Space-efficient Parallel Algorithm for Counting Exact Triangles in Massive Networks.
    Authors: Shaikh Arifuzzaman, Maleq Khan and Madhav Marathe.
    17th IEEE International Conference on High Performance Computing and Communications (HPCC), New York City, Aug. 2015.
    pdf version here.
  3. Fast Parallel Conversion of Edge List to Adjacency List for Large-Scale Graphs.
    Authors: Shaikh Arifuzzaman and Maleq Khan.
    23rd High Performance Computing Symposium (HPC), Alexandria, VA, USA, April 2015.
    pdf version here.
  4. Distributed Memory Parallel Algorithms for Massive Graphs.
    Authors: Maksudul Alam, Shaikh Arifuzzaman, Hasanuzzaman Bhuiyan, Maleq Khan, V.S. Anil Kumar, and Madhav Marathe.
    Parallel Graph Algorithms, CRC Press / Taylor & Francis, 2015 Ed. David Bader.